Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015912155.1_cds_XP_016462192.1_55446
CDS Infomation

[gene=LOC107785405] [db_xref=GeneID:107785405] [protein=4-coumarate--CoA ligase 1-like] [protein_id=XP_016462192.1] [location=complement(join(6464..6583,6944..7046,7176..7389,8655..8853,9931..10938))] [gbkey=CDS]
Sequence

ATGCCAATGGAGAGTAGTACCGAAACAAAGCAATCAGTAGATTTAATCTTCCGATCAAAA
CTCCCTGATATTTACATCCCTAAACATTTACCTTTACATTCTTATTGTTTCGAAAATATT
TTGGAGTTCAGTTCTCGTCCCTGTTTGATCAATGGAGCCAACGATCAAATTTATACTTAT
GCTGAAGTTGAGCTCACTTGTAGAAAAGTTGCAGCTGGTCTTAACAAGTTAGGGATCCAA
CAAAAGGACACGATTATGATCCTTTTGCCGAATTCCCCTGAATTTGTGTTCGCTTTTATG
GGCGCATCGTATTTAGGAGCCATTTCTACAATGGCCAATCCTCTGTTTACGCCAGCAGAG
GTTGTAAAACAAGCCAAAGCCTCAAGTGCTAAGATTATTATAACGCAATCGTGCTTTGTT
GGCAAAGTGAAGGATTACGCAAGTGAAAACGATGTGAAGGTCATTTGCATTGATTCTGCA
CCAGAAGGTTGTCTTCATTTCTCTGAATTGACACAATCTGAAGAGCATGGAATTCCTGAG
GTGAAAATCCAACCGGACGACGTCGTTGCGCTGCCGTATTCCTCTGGGACTACGGGTCTG
CCGAAAGGTGTGATGTTGACACACAAGGGATTAGTCACGAGCGTCGCACAACAAGTTGAC
GGTGAAAATGCCAATTTGTATATGCACAGTGAAGATGTATTGATGTGTGTGTTGCCTTTG
TTCCATATTTACTCACTCAATTCCATTTTGCTGTGTGGATTGAGAGTCGGAGCAGCGATT
TTGATTATGCAGAAATTCGACATTGCTCCGTTCTTGGAATTAATACAGAAGTATAAGGTG
TCAATTGGGCCATTTGTGCCGCCTATTGTTCTGGCTATTGCTAAGAGTCCAATTGTTGAT
AGCTATGATCTTTCATCAGTAAGGACTGTCATGTCTGGGGCTGCACCATTAGGAAAAGAA
CTCGAAGACGCTGTGCGAACCAAATTCCCTAATGCTAAACTTGGTCAGGGTTATGGAATG
ACGGAAGCTGGGCCGGTGTTGGCAATGTGTTTGGCATTTGCAAAAGAACCCTTTGATATA
AAATCAGGAGCATGTGGTACTGTTGTGAGGAACGCCGAGATGAAAATCGTAGATCCAGAT
ACGGGTTGCTCTCTTCCTCGTAACCAACCCGGTGAGATTTGCATTAGAGGTGACCAGATC
ATGAAAGGTTACCTGAATGATCCAGAGGCCACAACGAGAACAATAGACAAAGAAGGATGG
TTACACACTGGCGACATTGGGTTCATTGACGAAGATGACGAGCTTTTTATTGTGGATCGA
TTGAAGGAATTGATCAAATACAAAGGATTTCAAGTTGCACCTGCAGAAATTGAAGCCCTT
CTCCTCAACCATCCCAACATTTCTGATGCTGCTGTTGTCCCTATGAAAGACGAGCAAGCG
GGAGAAGTTCCGGTGGCTTTTGTTGTTAGGTCAAATGGATCTGCCATCACTGAAGATGAA
GTCAAGGATTTCGTATCTAAACAGGTGATATTTTATAAGAGAGTAAAGCGTGTATTTTTC
GTGGAGACGGTACCCAAATCTCCGTCGGGAAAAATTCTTAGAAAGGACTTGAGAGCTAGA
CTGGCTGCTGGTGTTCCAAAGTAA

Peptide Sequence

PEP ID

XP_016462192.1
PEP Infomation

PREDICTED: 4-coumarate--CoA ligase 1-like [Nicotiana tabacum]
Sequence

MPMESSTETKQSVDLIFRSKLPDIYIPKHLPLHSYCFENILEFSSRPCLINGANDQIYTY
AEVELTCRKVAAGLNKLGIQQKDTIMILLPNSPEFVFAFMGASYLGAISTMANPLFTPAE
VVKQAKASSAKIIITQSCFVGKVKDYASENDVKVICIDSAPEGCLHFSELTQSEEHGIPE
VKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSEDVLMCVLPL
FHIYSLNSILLCGLRVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVLAIAKSPIVD
SYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDI
KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATTRTIDKEGW
LHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAEIEALLLNHPNISDAAVVPMKDEQA
GEVPVAFVVRSNGSAITEDEVKDFVSKQVIFYKRVKRVFFVETVPKSPSGKILRKDLRAR
LAAGVPK

Transcript Sequence

Gene sequence data has not been registered.